Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRP rs1295291 chr6:65905036 C/A 2.45E-8 287 26 18.73 13.07 KM Plot
KIRP rs12988464 chr2:100946285 A/G 0.000178 288 22.22 26.2 25.5 KM Plot
KIRP rs12991519 chr2:128509413 G/C 1.33E-6 285 25.97 21.67 8.47 KM Plot
KIRP rs12997112 chr2:128507210 T/C 1.33E-6 285 25.97 21.67 8.47 KM Plot
KIRP rs12999779 chr2:100924321 T/G 0.000172 285 26.92 25.7 25.15 KM Plot
KIRP rs13020451 chr2:100927131 T/G 0.000148 285 27.43 25.67 25.15 KM Plot
KIRP rs13078292 chr3:16017462 C/G 6.09E-5 285 21.63 26.28 25.65 KM Plot
KIRP rs13083197 chr3:197174137 G/A 1.44E-5 279 25.23 26.8 18.45 KM Plot
KIRP rs13083312 chr3:154030027 C/G 6.15E-5 286 25.67 28.03 20 KM Plot
KIRP rs13084372 chr3:124644411 C/T 0.000163 282 25.93 26.63 17.9 KM Plot
KIRP rs13090332 chr3:124638058 C/G 7.19E-6 279 26.28 22.9 16.4 KM Plot
KIRP rs13098723 chr3:197158756 G/A 1.96E-5 278 25.23 27.43 19.63 KM Plot
KIRP rs13099300 chr3:197172252 T/C 8.4E-5 279 25.37 26.77 19.95 KM Plot
KIRP rs13131239 chr4:160509610 A/G 7.43E-12 288 25.58 34.3 8.6 KM Plot
KIRP rs13139047 chr4:177244885 T/C 2.85E-5 281 25.63 28.17 23.23 KM Plot